All functions
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classMat()
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Classification matrix estimating accuracy of model. |
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getLib()
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Dataframe of TARSs library. |
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iCATinteractive()
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Launch interactive interface |
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plotHist()
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Plot histogram of clonotype frequencies in negative and positive samples. |
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pred()
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Predict the exposure status of an independent sample. |
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processFiles()
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Internal function for transforming input files. |
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readTrn()
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Read input training data. |
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savePlot()
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Save plot to pdf. |
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train()
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Main training function. |
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trnStats()
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Statistics about training data. |
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tsvDir()
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List TSV files in a directory. |