Plot histogram of clonotype frequencies in negative and positive samples.

Plot histogram of clonotype frequencies in negative and positive samples.

plotHist(comb)

Arguments

comb	List containing both negtive (n) and positive (v) clonotype percentages.

Value

ggplot histogram of clonotype frequencies in negative and positive samples

Examples

FIELD <- "vGeneName aminoAcid jGeneName"
COUNT <- "copy"
P_CUTOFF <- 0.1
MIN_PUBLIC <- 2
COPY_RANGE <- "1 99"

listPos <- tsvDir(system.file("extdata", "Post", package="iCAT"))
listNeg <- tsvDir(system.file("extdata", "Pre", package="iCAT"))

naive <- readTrn(listNeg, FIELD, COUNT, COPY_RANGE, "naive")
vaccs <- readTrn(listPos, FIELD, COUNT, COPY_RANGE, "vacc")

mod <- train(naive, vaccs, listNeg, listPos, FIELD, COUNT, COPY_RANGE, P_CUTOFF, MIN_PUBLIC, NULL)
plotHist(mod)
#> `stat_bin()` using `bins = 30`. Pick better value with `binwidth`.