This is an internal function used to do the GO analysis.
GOanalysis(analyzeData, biomaRt.go.df, speciesEnsembl, repNames, GODomain, GOScoring, GoGraphing, sigCount = 15, sigCutOff = 0.01, textScale = 0.15)
analyzeData | dataframe to be analyzed |
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biomaRt.go.df | dataframe of gene id to GO term |
speciesEnsembl | Ensembl used to call the bioMart if biomaRt.df is null |
repNames | Order/naming of the replications |
GODomain | Option for what GO domain to use for the analysis |
GOScoring | Option for what method should be used for the GO scoring |
GoGraphing | Option for what method should be used for the GO graphig |
sigCount | Option for the number of significant terms are needed in the nodes to count |
sigCutOff | Option for the p value to mark significance |
textScale | Option to alter text size in GO graph |
returns the GO data