This is an internal function used to do the GO analysis.
GOanalysis(analyzeData, biomaRt.go.df, speciesEnsembl, repNames, GODomain, GOScoring, GoGraphing, sigCount = 15, sigCutOff = 0.01, textScale = 0.15)
| analyzeData | dataframe to be analyzed |
|---|---|
| biomaRt.go.df | dataframe of gene id to GO term |
| speciesEnsembl | Ensembl used to call the bioMart if biomaRt.df is null |
| repNames | Order/naming of the replications |
| GODomain | Option for what GO domain to use for the analysis |
| GOScoring | Option for what method should be used for the GO scoring |
| GoGraphing | Option for what method should be used for the GO graphig |
| sigCount | Option for the number of significant terms are needed in the nodes to count |
| sigCutOff | Option for the p value to mark significance |
| textScale | Option to alter text size in GO graph |
returns the GO data